File:Two-Distinct-States-of-the-HAMP-Domain-from-Sensory-Rhodopsin-Transducer-Observed-in-Unbiased-pone.0066917.s003.ogv
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Two-Distinct-States-of-the-HAMP-Domain-from-Sensory-Rhodopsin-Transducer-Observed-in-Unbiased-pone.0066917.s003.ogv (Ogg Theora video file, length 7.5 s, 600 × 352 pixels, 1.21 Mbps, file size: 1.08 MB)
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DescriptionTwo-Distinct-States-of-the-HAMP-Domain-from-Sensory-Rhodopsin-Transducer-Observed-in-Unbiased-pone.0066917.s003.ogv |
English: Example of the signaling-to-resting state transition from the molecular dynamics simulations. Presented is a part of the trajectory 3 from the simulation 4 (AMBER forcefield, starting from the signaling state). The arrows highlight the motions of the helices AS1 and AS1’. The trajectory is smoothened with a window of 11 ns in order to remove fast motions. Projection of the structure on the first principal component is also shown. |
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Source | Movie S2 from Gushchin I, Gordeliy V, Grudinin S (2013). "Two Distinct States of the HAMP Domain from Sensory Rhodopsin Transducer Observed in Unbiased Molecular Dynamics Simulations". PLOS ONE. DOI:10.1371/journal.pone.0066917. PMID 23843970. PMC: 3699570. | ||
Author | Gushchin I, Gordeliy V, Grudinin S | ||
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Date/Time | Thumbnail | Dimensions | User | Comment | |
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current | 01:17, 13 July 2013 | 7.5 s, 600 × 352 (1.08 MB) | Open Access Media Importer Bot (talk | contribs) | Automatically uploaded media file from Open Access source. Please report problems or suggestions here. |
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Author | Gushchin I, Gordeliy V, Grudinin S |
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Usage terms | http://creativecommons.org/licenses/by/3.0/ |
Image title | Example of the signaling-to-resting state transition from the molecular dynamics simulations. Presented is a part of the trajectory 3 from the simulation 4 (AMBER forcefield, starting from the signaling state). The arrows highlight the motions of the helices AS1 and AS1?. The trajectory is smoothened with a window of 11 ns in order to remove fast motions. Projection of the structure on the first principal component is also shown. |
Software used | Xiph.Org libtheora 1.1 20090822 (Thusnelda) |
Date and time of digitizing | 2013 |