File:Pone.0023479.g001.png
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Size of this preview: 283 × 600 pixels. Other resolutions: 113 × 240 pixels | 226 × 480 pixels | 362 × 768 pixels | 483 × 1,024 pixels | 2,092 × 4,432 pixels.
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Captions
Captions
Phylogenetic trees of RelA/SpoT homologue family separated by hydrolase (HD) and synthetase (SYNTH) functions.
Summary[edit]
| Description |
English: Maximum likelihood phylogenies of the ppGpp synthetase and hydrolase domains.
Trees were generated from RaxML analyses of alignments of A) the ppGpp hydrolase (HD) domain-containing dataset (168 amino acid positions, 1535 sequences), and B) the ppGpp synthetase (SYNTH) domain-containing dataset (670 amino acid positions, 1706 sequences). In both trees, subgroups are labeled and shading behind the branches shows the most common domain structure observed for those groups, as per the legend in the inset box. Symbols on branches indicate bootstrap support, as per the inset box. In cases where the whole subgroup carries both the HD and SYNTH domain (Rel, SpoT, RelA, Rsh1-4, RshA-D), bootstrap support comes from the full length long RSH tree (supplementary file SI2). Branch length is proportional to the number of substitutions per site (see scale bar). |
| Date | |
| Source | https://www.flickr.com/photos/123621741@N08/13933450607/ |
| Author | PLOS ONE PHYLOGENY |
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This image was originally posted to Flickr by plosone-phylo at https://flickr.com/photos/123621741@N08/13933450607. It was reviewed on 5 May 2022 by FlickreviewR 2 and was confirmed to be licensed under the terms of the cc-by-2.0. |
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