File:41598 2017 3904 Fig1.webp
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English: The genome and genomic islands (GI) of Ferroplasma acidiphilum YT. Localization of GIs on the chromosome of F. acidiphilum YT (aka DSM:12658T), as predicted by SWGIS (pink boxes), IslandViewer (blue boxes) and GOTHAM (yellow boxes). Histograms in the inner cycles of the atlas depict variations of the following oligonucleotide usage parameters: GC-content (black curve); ratio of generalized to local relative variances calculated for tetranucleotide usage patterns normalized by the GC-content (blue curve, n1_4mer:GRV/n1_4mer:RV); distances between not-normalized local tetranucleotide usage pattern and the global one calculated for the complete chromosome (red curve, n0_4mer:D); asymmetry between not-normalized tetranucleotide usage patterns calculated for the direct and complement DNA strands (green curve, n0_4mer:PS). Use of these parameters for GI identification and their standard abbreviations were explained in more detail68. Green arrowheads (outer circle) indicate single-nucleotide substitutions in the genome of F. acidiphilum YT after ~550 generations in the laboratory culture. |
| Date | |
| Source | Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT. In: Scientific Reports volume 7, Article number: 3682 (2017); doi:10.1038/s41598-017-03904-5 |
| Author | Olga V. Golyshina, Hai Tran, Oleg N. Reva, Sofia Lemak, Alexander F. Yakunin, Alexander Goesmann, Taras Y. Nechitaylo, Violetta LaCono, Francesco Smedile, Alexei Slesarev, David Rojo, Coral Barbas, Manuel Ferrer, Michail M. Yakimov, Peter N. Golyshin |
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| Date/Time | Thumbnail | Dimensions | User | Comment | |
|---|---|---|---|---|---|
| current | 11:22, 26 February 2023 | | 675 × 617 (70 KB) | Ernsts (talk | contribs) | Uploaded a work by Olga V. Golyshina, Hai Tran, Oleg N. Reva, Sofia Lemak, Alexander F. Yakunin, Alexander Goesmann, Taras Y. Nechitaylo, Violetta LaCono, Francesco Smedile, Alexei Slesarev, David Rojo, Coral Barbas, Manuel Ferrer, Michail M. Yakimov, Peter N. Golyshin from ''Metabolic and evolutionary patterns in the extremely acidophilic archaeon ''Ferroplasma acidiphilum'' Y<sup>T</sup>''. In: ''Scientific Reports'' volume 7, Article number: 3682 (2017); doi:10.1038/s41598-017-03904-5... |
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