File:Fmicb-02-00116-g004 (14235966477).jpg

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Source: Front. Microbiol., 24 May 2011 | doi:10.3389/fmicb.2011.00116 Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria Lea H. Gregersen, Donald A. Bryant and Niels-Ulrik Frigaard

Figure 4. Phylogenetic trees of oxidative sulfur metabolism enzymes. Tree construction details are as described for Figure 2. Sequences from GSB are shown in green; sequences from PSB are shown in purple. (A) FccB/SoxF/SoxJ homologs (the designation SoxJ is used if the gene is part of a soxJXYZAKBW cluster in GSB; the designation FccB is used if the gene is part of a fccAB cluster in GSB or PSB; the designation SoxF is used if the gene is part of a soxEF cluster in organisms other than GSB and PSB). The question mark indicates an unnamed protein. All proteins in the tree except the root had a signal peptide for the twin-arginine translocon (data not shown). The tree is rooted with Cfx. aurantiacus SqrB. (B) Concatenation of SoxXYZAKB proteins (CT1016–CT1021 in Cba. tepidum). The three is rooted with the same proteins from Oceanospirillum sp. MED92. (C) Adenosine-5′-phosphosulfate reductase alpha subunit (AprA). The three is rooted with a homologous protein from Ammonifex degensii. Proteins marked with a boxed “M” indicate that the organism has AprM; proteins marked with a boxed “Q” indicate that the organism has Qmo proteins. (D) Polysulfide reductase-like complex 3 (PSRLC3). The three is rooted with a homologous protein from Sulfurihydrogenibium yellowstonense. The PSRLC3 protein from Chl. phaeovibrioides DSM 265 used here was constructed by restoring a frameshift mutation in the gene (Table 1). See text for details.
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Author Phylogeny Figures

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